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76 changes: 0 additions & 76 deletions dev/_sources/api/skimage.io.rst.txt
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Expand Up @@ -10,39 +10,19 @@
.. autosummary::
:nosignatures:

call_plugin
concatenate_images
find_available_plugins
imread
imread_collection
imread_collection_wrapper
imsave
imshow
imshow_collection
load_sift
load_surf
plugin_info
plugin_order
pop
push
reset_plugins
show
use_plugin

ImageCollection
MultiImage

collection
manage_plugins
sift
util

------------


.. autofunction:: call_plugin

.. minigallery:: skimage.io.call_plugin

------------

Expand All @@ -54,13 +34,6 @@
------------


.. autofunction:: find_available_plugins

.. minigallery:: skimage.io.find_available_plugins

------------


.. autofunction:: imread

.. minigallery:: skimage.io.imread
Expand Down Expand Up @@ -89,20 +62,6 @@
------------


.. autofunction:: imshow

.. minigallery:: skimage.io.imshow

------------


.. autofunction:: imshow_collection

.. minigallery:: skimage.io.imshow_collection

------------


.. autofunction:: load_sift

.. minigallery:: skimage.io.load_sift
Expand All @@ -117,20 +76,6 @@
------------


.. autofunction:: plugin_info

.. minigallery:: skimage.io.plugin_info

------------


.. autofunction:: plugin_order

.. minigallery:: skimage.io.plugin_order

------------


.. autofunction:: pop

.. minigallery:: skimage.io.pop
Expand All @@ -142,27 +87,6 @@

.. minigallery:: skimage.io.push

------------


.. autofunction:: reset_plugins

.. minigallery:: skimage.io.reset_plugins

------------


.. autofunction:: show

.. minigallery:: skimage.io.show

------------


.. autofunction:: use_plugin

.. minigallery:: skimage.io.use_plugin


.. autoclass:: ImageCollection
:members:
Expand Down
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Expand Up @@ -351,7 +351,7 @@ will not work either.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7f56e53337e0>
<function explore_slices.<locals>.display_slice at 0x7faf83493c40>



Expand Down Expand Up @@ -473,7 +473,7 @@ slices interactively.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7f56e54872e0>
<function explore_slices.<locals>.display_slice at 0x7faf82b905e0>



Expand Down Expand Up @@ -584,7 +584,7 @@ Note that this works in a static HTML page!

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 10.681 seconds)
**Total running time of the script:** (0 minutes 10.607 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_image_processing.py:
Expand Down
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Expand Up @@ -148,7 +148,7 @@ The `imshow` function can display both grayscale and RGB(A) 2D images.
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [64..4095].
<matplotlib.image.AxesImage object at 0x7fe90a302f60>
<matplotlib.image.AxesImage object at 0x7faf840d4710>
Expand Down Expand Up @@ -375,7 +375,7 @@ The biologist's eye can spot that the two bright blobs (best seen in
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 14.999 seconds)
**Total running time of the script:** (0 minutes 13.602 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_interaction.py:
Expand Down
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Expand Up @@ -524,7 +524,7 @@ we would get the pancake situation.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 4.920 seconds)
**Total running time of the script:** (0 minutes 4.216 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_structure_tensor.py:
Expand Down
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Expand Up @@ -342,7 +342,7 @@ labeled individually.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.126 seconds)
**Total running time of the script:** (0 minutes 2.003 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_coins_segmentation.py:
Expand Down
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Expand Up @@ -177,7 +177,7 @@ much lower than the overlap coefficient.
.. code-block:: none
np.float64(0.21961338873782002)
np.float64(0.23522817010110394)
Expand Down Expand Up @@ -281,7 +281,7 @@ would give us a good measure of how strong the association is.

.. code-block:: none
PCC: 0.862, p-val: 0
PCC: 0.822, p-val: 0
Expand Down Expand Up @@ -309,7 +309,7 @@ case.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.077 seconds)
**Total running time of the script:** (0 minutes 1.495 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_colocalization_metrics.py:
Expand Down
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Expand Up @@ -126,6 +126,9 @@ represented as grayscale.
.. raw:: html
:file: images/sphx_glr_plot_cornea_spot_inpainting_001.html




Expand Down Expand Up @@ -168,9 +171,9 @@ variance.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_001.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
:alt: Image median over time, Image variance over time
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_001.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -244,9 +247,9 @@ it is easier for us to compare them:
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
:alt: block_size = 21, block_size = 43
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -278,9 +281,9 @@ closer to the desired results.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
:alt: No offset, Offset = 15
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -315,9 +318,9 @@ lines, while preserving the shape and size of larger objects.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
:alt: mask before, after opening
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -352,9 +355,9 @@ Next, we can make the detected areas wider by applying a dilation filter:
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
:alt: Before, After dilation
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -461,9 +464,9 @@ parameter).
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_007.png
:alt: Segmented spots over restored image
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_007.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -492,7 +495,7 @@ the opening processing step, when removing fine-grained features.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 29.335 seconds)
**Total running time of the script:** (0 minutes 28.899 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_cornea_spot_inpainting.py:
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Original file line number Diff line number Diff line change
Expand Up @@ -134,7 +134,7 @@ using `OpenCV train cascade utility
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.465 seconds)
**Total running time of the script:** (0 minutes 0.479 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_face_detection.py:
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Original file line number Diff line number Diff line change
Expand Up @@ -119,6 +119,9 @@ The dataset is a 2D image stack with 15 frames (time points) and 2 channels.
.. raw:: html
:file: images/sphx_glr_plot_fluorescence_nuclear_envelope_001.html




Expand Down Expand Up @@ -282,9 +285,9 @@ Let us visualize these processing steps in a sequence of subplots.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_001.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:alt: a) Raw, b) Blur, c) Threshold, c-1) Fill in, c-2) Keep one nucleus, d) Dilate, e) Erode, f) Nucleus Rim
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_001.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -321,9 +324,9 @@ it as a mask to measure the intensity in the second channel.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:alt: Second channel (raw), Selection
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -594,9 +597,9 @@ regions.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
:alt: Change in fluorescence intensity at the nuclear envelope
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
:class: sphx-glr-single-img


Expand All @@ -612,7 +615,7 @@ time points, and then becomes roughly constant.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.691 seconds)
**Total running time of the script:** (0 minutes 2.909 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_fluorescence_nuclear_envelope.py:
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