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2 changes: 1 addition & 1 deletion dev/.buildinfo
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# Sphinx build info version 1
# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 043ad8bec5b91388b6dd20baf11f9b5a
config: fcac26313e2bd8d4cbd452fe90ed7b0a
tags: 645f666f9bcd5a90fca523b33c5a78b7
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Expand Up @@ -351,7 +351,7 @@ will not work either.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7f3237f51940>
<function explore_slices.<locals>.display_slice at 0x7f56e53337e0>



Expand Down Expand Up @@ -473,7 +473,7 @@ slices interactively.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7f3235027880>
<function explore_slices.<locals>.display_slice at 0x7f56e54872e0>



Expand Down Expand Up @@ -584,7 +584,7 @@ Note that this works in a static HTML page!

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 7.291 seconds)
**Total running time of the script:** (0 minutes 10.681 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_image_processing.py:
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Expand Up @@ -148,7 +148,7 @@ The `imshow` function can display both grayscale and RGB(A) 2D images.
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [64..4095].
<matplotlib.image.AxesImage object at 0x7f32372bbaa0>
<matplotlib.image.AxesImage object at 0x7fe90a302f60>
Expand Down Expand Up @@ -322,9 +322,6 @@ Click the play button to move along the ``z`` axis, through the stack of all
.. raw:: html
:file: images/sphx_glr_plot_3d_interaction_005.html

Expand All @@ -351,9 +348,6 @@ Combine channel facetting and slice animation
.. raw:: html
:file: images/sphx_glr_plot_3d_interaction_006.html

Expand Down Expand Up @@ -381,7 +375,7 @@ The biologist's eye can spot that the two bright blobs (best seen in
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 6.983 seconds)
**Total running time of the script:** (0 minutes 14.999 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_interaction.py:
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Expand Up @@ -524,7 +524,7 @@ we would get the pancake situation.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.287 seconds)
**Total running time of the script:** (0 minutes 4.920 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_structure_tensor.py:
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Expand Up @@ -342,7 +342,7 @@ labeled individually.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.517 seconds)
**Total running time of the script:** (0 minutes 2.126 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_coins_segmentation.py:
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Expand Up @@ -177,7 +177,7 @@ much lower than the overlap coefficient.
.. code-block:: none
np.float64(0.25370118686950205)
np.float64(0.21961338873782002)
Expand Down Expand Up @@ -281,7 +281,7 @@ would give us a good measure of how strong the association is.

.. code-block:: none
PCC: 0.793, p-val: 0
PCC: 0.862, p-val: 0
Expand Down Expand Up @@ -309,7 +309,7 @@ case.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.201 seconds)
**Total running time of the script:** (0 minutes 2.077 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_colocalization_metrics.py:
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Expand Up @@ -126,9 +126,6 @@ represented as grayscale.
.. raw:: html
:file: images/sphx_glr_plot_cornea_spot_inpainting_001.html

Expand Down Expand Up @@ -171,9 +168,9 @@ variance.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_001.png
:alt: Image median over time, Image variance over time
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_001.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -247,9 +244,9 @@ it is easier for us to compare them:
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
:alt: block_size = 21, block_size = 43
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -281,9 +278,9 @@ closer to the desired results.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
:alt: No offset, Offset = 15
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -318,9 +315,9 @@ lines, while preserving the shape and size of larger objects.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
:alt: mask before, after opening
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -355,9 +352,9 @@ Next, we can make the detected areas wider by applying a dilation filter:
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
:alt: Before, After dilation
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -464,9 +461,9 @@ parameter).
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_007.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
:alt: Segmented spots over restored image
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_007.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -495,7 +492,7 @@ the opening processing step, when removing fine-grained features.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 17.424 seconds)
**Total running time of the script:** (0 minutes 29.335 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_cornea_spot_inpainting.py:
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Expand Up @@ -134,7 +134,7 @@ using `OpenCV train cascade utility
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.337 seconds)
**Total running time of the script:** (0 minutes 0.465 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_face_detection.py:
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Expand Up @@ -119,9 +119,6 @@ The dataset is a 2D image stack with 15 frames (time points) and 2 channels.
.. raw:: html
:file: images/sphx_glr_plot_fluorescence_nuclear_envelope_001.html

Expand Down Expand Up @@ -285,9 +282,9 @@ Let us visualize these processing steps in a sequence of subplots.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_001.png
:alt: a) Raw, b) Blur, c) Threshold, c-1) Fill in, c-2) Keep one nucleus, d) Dilate, e) Erode, f) Nucleus Rim
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_001.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -324,9 +321,9 @@ it as a mask to measure the intensity in the second channel.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:alt: Second channel (raw), Selection
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -597,9 +594,9 @@ regions.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:alt: Change in fluorescence intensity at the nuclear envelope
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:class: sphx-glr-single-img


Expand All @@ -615,7 +612,7 @@ time points, and then becomes roughly constant.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.730 seconds)
**Total running time of the script:** (0 minutes 2.691 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_fluorescence_nuclear_envelope.py:
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Expand Up @@ -66,6 +66,9 @@ References
.. raw:: html
:file: images/sphx_glr_plot_haar_extraction_selection_classification_001.html




Expand Down Expand Up @@ -186,9 +189,9 @@ drastically speed up the computation while retaining accuracy.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_haar_extraction_selection_classification_001.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_haar_extraction_selection_classification_002.png
:alt: The most important features
:srcset: /auto_examples/applications/images/sphx_glr_plot_haar_extraction_selection_classification_001.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_haar_extraction_selection_classification_002.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -282,15 +285,15 @@ Once the features are extracted, we can train and test a new classifier.

.. code-block:: none
Computing the full feature set took 33.648s, plus 1.642s training, for an AUC of 1.00. Computing the restricted feature set took 0.098s, plus 1.361s training, for an AUC of 1.00.
Computing the full feature set took 54.904s, plus 2.773s training, for an AUC of 1.00. Computing the restricted feature set took 0.096s, plus 1.612s training, for an AUC of 1.00.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 39.310 seconds)
**Total running time of the script:** (1 minutes 2.403 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_haar_extraction_selection_classification.py:
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Expand Up @@ -447,6 +447,9 @@ label with argument `bg_label=0`.
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_006.png
:class: sphx-glr-single-img

.. raw:: html
:file: images/sphx_glr_plot_human_mitosis_007.html




Expand Down Expand Up @@ -519,7 +522,7 @@ cells in this sample. Therefore, we estimate the mitotic index to be:
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.998 seconds)
**Total running time of the script:** (0 minutes 3.944 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_human_mitosis.py:
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Expand Up @@ -192,7 +192,7 @@ Blend

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.016 seconds)
**Total running time of the script:** (0 minutes 2.684 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_image_comparison.py:
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Expand Up @@ -70,7 +70,7 @@ functions only work on gray-scale or binary images, so we set ``as_gray=True``.
.. code-block:: none
<matplotlib.image.AxesImage object at 0x7f3234a07f20>
<matplotlib.image.AxesImage object at 0x7f01eca4d670>
Expand Down Expand Up @@ -464,7 +464,7 @@ Additional Resources
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.365 seconds)
**Total running time of the script:** (0 minutes 2.166 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_morphology.py:
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Expand Up @@ -199,7 +199,7 @@ to the position of the centroid!

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 59.923 seconds)
**Total running time of the script:** (1 minutes 18.363 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_pixel_graphs.py:
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Expand Up @@ -1104,7 +1104,7 @@ on increasing image size:

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 39.728 seconds)
**Total running time of the script:** (0 minutes 53.916 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_rank_filters.py:
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Expand Up @@ -515,7 +515,7 @@ polynomial to the scatter plot. The velocity is the first-order coefficient.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.788 seconds)
**Total running time of the script:** (0 minutes 4.084 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_solidification_tracking.py:
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2 changes: 1 addition & 1 deletion dev/_sources/auto_examples/applications/plot_text.rst.txt
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Expand Up @@ -83,7 +83,7 @@ just wants to write onto the image, this step is not necessary.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.798 seconds)
**Total running time of the script:** (0 minutes 0.920 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_text.py:
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