Added Docker file

docker/DockerUsage.md

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+# Genius TCAD Docker Usage
+
+Genius-TCAD uses a number of old versions of libraries, this makes it increasingly difficult to compile and run on the latest Linux distributions.  To work around this a Docker image of an older Ubuntu 14.04 distribution is used.
+
+## Installation
+
+### Docker Installation
+
+Search for instructions on how to install Docker on your distribution.
+
+### Container Installation
+
+To install the Docker container navigate to the folder containing this document and execute the following command:
+
+    ./build.sh
+
+The software will be automatically downloaded and installed - this will take some time.
+
+
+## Usage
+
+To interact with the installed container execute the following command:
+
+    ./bash.sh
+
+Which will allow you to navigate and execute software within the container.
+
+To move files to and from the container use the Docker command (from a host terminal):
+
+    docker cp INST_NAME:/container/file/location /host/file/location
+
+Use the ``docker ps`` to file the instance name of running containers.
+

docker/Dockerfile

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+FROM ubuntu:14.04
+
+### Install prerequistes
+RUN apt update --fix-missing
+RUN apt update && apt upgrade -y && apt install -y build-essential cmake gfortran git flex bison \
+	wget curl python python-sip-dev libglu1-mesa-dev freeglut3-dev mesa-common-dev hdf5-tools linux-headers-generic \
+	libvtk5-dev libvtk5-qt4-dev python-vtk tcl-vtk lvtk-dev lvtk-tools vtkdata libhdf5-dev
+
+
+### Install PETSC
+RUN wget http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.5.4.tar.gz
+RUN tar -xvf petsc-3.5.4.tar.gz
+WORKDIR petsc-3.5.4
+RUN ./configure --with-mpi=0 \
+  		--with-debugging=0 --with-shared-libraries=0 --with-x=0 --with-pic=1 \
+  		--download-f2cblaslapack=1 \
+  		--download-metis=1 \
+  		--download-superlu=1 \
+  		--COPTFLAGS="-O2" --CXXOPTFLAGS="-O2" --FOPTFLAGS="-O2"
+RUN make
+
+
+### Install CGNS
+WORKDIR /
+RUN curl -O -J -L https://sourceforge.net/projects/cgns/files/cgnslib_2.5/Release%205/cgnslib_2.5-5.tar.gz/download
+RUN tar -xvf cgnslib_2.5-5.tar.gz
+WORKDIR cgnslib_2.5
+RUN chmod +x configure
+RUN ./configure --enable-shared
+RUN make && make install
+
+
+### Install Genius
+WORKDIR /
+RUN git clone https://github.com/cogenda/Genius-TCAD-Open.git
+WORKDIR Genius-TCAD-Open
+
+RUN echo "--- wscript.orig	2020-04-18 19:02:15.583526950 +0000" >> lib.patch
+RUN echo "+++ wscript	2020-04-18 19:06:15.895709943 +0000" > lib.patch
+RUN echo "@@ -805,7 +805,7 @@" >> lib.patch
+RUN echo "   def config_vtk():" >> lib.patch
+RUN echo "     libs = '''vtkRendering vtkGraphics vtkImaging vtkIO vtkFiltering" >> lib.patch
+RUN echo "-              vtkCommon vtksys vtkDICOMParser vtkpng vtktiff vtkzlib" >> lib.patch
+RUN echo "+              vtkCommon vtksys vtkDICOMParser" >> lib.patch
+RUN echo "-              vtkjpeg vtkexpat vtkftgl vtkfreetype'''.split()" >> lib.patch
+RUN echo "+              vtkmetaio'''.split()" >> lib.patch
+RUN echo "" >> lib.patch
+RUN echo "     if platform=='Linux':" >> lib.patch
+RUN echo "       libs.append('pthread')" >> lib.patch
+RUN patch wscript < lib.patch
+
+RUN ./waf --prefix=$PWD \
+	--with-petsc-dir=/petsc-3.5.4 \
+	--with-petsc-arch=arch-linux2-c-opt \
+	--with-vtk-ver=vtk-5.8 \
+	--with-vtk-dir=/usr \
+	configure build install
+
+# set the enviroment enviroments
+ENV GENIUS_DIR /Genius-TCAD-Open
+ENV LD_LIBRARY_PATH $LD_LIBRARY_PATH/:$GENIUS_DIR/lib:/usr/local/lib/

docker/bash.sh

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+docker run -it genius-tcad /bin/bash

docker/build.sh

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+docker build -t genius-tcad .