Repository for materials used at the Baskerville Training workshop held for our partners at The Rosalind Franklin Institute and Diamond Light Source.
| Time | Name | Description | Duration | Instructor | Helper |
|---|---|---|---|---|---|
| 11:00 - 12:00 | Intro to Baskerville HPC | Introduction to the cluster, how to acknowledge, logging in, architecture & system explaination | 1h | Gavin Yearwood | Matthew Barton |
| 12:00 - 13:00 | Lunch | – | 1h | – | – |
| 13:30 - 14:00 | Doppio - RELION (part 1) | Presentation and Practical demo | 30m | Colin Palmer | Gavin Yearwood, Dimitrios Bellos |
| 14:00 - 14:15 | Break | – | 15m | – | – |
| 14:15 - 15:15 | Doppio - RELION (part 2) | Practical demo | 1h | Colin Palmer | Gavin Yearwood, Dimitrios Bellos |
| 15:15 - 15:30 | Break | – | 15m | – | – |
| 15:30 - 16:00 | Data Transfers with Globus, FlowCron | Logging in to Globus, GUI, Globus Connect Personal, How FlowCron works | 30m | Dimitrios Bellos | Gavin Yearwood, Matthew Barton |
| Time | Name | Description | Duration | Instructor | Helper |
|---|---|---|---|---|---|
| 9:00 - 9:30 | Morning Coffee | – | 30m | – | – |
| 9:30 - 10:30 | Interactive Jobs (srun) |
Using Tmux, SLURM and the basics of scheduling, resource requests, module loading | 1h15m | Gavin Yearwood | Simon Hartley |
| 10:45 - 11:00 | Break | – | 15m | – | – |
| 11:00 - 12:15 | Non-Interactive Batch Jobs (sbatch) |
Using SLURM and the basics of scheduling, resource requests, module loading | 1h15m | Matthew Barton | Gavin Yearwood |
| 12:15 - 13:15 | Lunch | – | 1h | – | – |
| 13:15 - 14:30 | Self-installed software with pip and/or 'mamba' and using containers |
Self-installed Python environments, Miniforge and using apptainer |
1h15m | Simon Hartley | Matthew Barton |
| 14:30 - 14:45 | Break | – | 15m | – | – |
| 14:45 - 15:45 | Baskerville Portal Interactive Apps (apart from Doppio) | Jupyter Notebook, Nvidia dashboard | 1h | Gavin Yearwood | Simon Harley |
| 15:45 - 16:00 | Wrap-up and close | Signposts to further resources, getting support from the Baskerville RSE service and feedback | 15m | Gavin Yearwood |