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Friction options clean#15

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EstherHeck wants to merge 193 commits intoanne-glerum:fix_stresses_elasticityanne-glerum/aspect:fix_stresses_elasticityfrom EstherHeck:Friction-Options-cleanEstherHeck/aspect:Friction-Options-cleanCopy head branch name to clipboard

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Commits on Sep 27, 2023

• Update VEP implementation

  anne-glerum

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  3d40b30

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• Fix merge leftovers

  anne-glerum

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  99818de

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• Output full stress in visu pp

  anne-glerum

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• Add includes

  anne-glerum

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• Rm include

  anne-glerum

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  05fabe7

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• Fix shear stress pp

  anne-glerum

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  8b72684

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• Make sure particle update occurs at start timestep

  anne-glerum

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  1f0a04a

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• Fix Assert

  anne-glerum

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• Do not during particle update before t1

  anne-glerum

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• Add Assert to visu plugins

  anne-glerum

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  a874f22

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• Check that composition particle property is not used

  anne-glerum

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• Only compute stress tensor residuals when elasticity is on

  anne-glerum

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  1ea99dc

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• Fix after merge

  anne-glerum

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  52b6a0e

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• Address two review comments

  anne-glerum

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Commits on Sep 28, 2023

• Check that ve_stress_xx exists before asking field nr

  anne-glerum

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  86344e8

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• Rm removed pp from prm files

  anne-glerum

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Commits on Oct 8, 2023

• Fix tests

  anne-glerum

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Commits on Oct 10, 2023

• Merge branch 'main' into fix_stresses_elasticity

  gassmoeller

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  30df10c

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Commits on Nov 29, 2023

• added friction rheology

  EstherHeck

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  9309f36

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• modified repeat timestep to faster decrease dt-size

  EstherHeck

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• added compute_current_edot_ii in material-utilities

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• friction options are taken into account from visco_plastic

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  a56f8bb

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• changed critical slip distance from double to function input

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  c4e905c

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• found wrong } from rebasing

  EstherHeck

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  6dc3d38

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• RSF in plasticadditional outputs - needs some more work

  EstherHeck

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  ea8cb50

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• deleted ifs that sent me errors

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  7d4132d

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• added more info to function error

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  0716818

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• consider min SR for radiation damping

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  3731389

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• regularized RSF only with positive a

  EstherHeck

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  8ff7808

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• added *2 in radiation damping, fixed arcsinh-friction, moved elastic shear moduli

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• started on new yield mechanism

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• included current_edot_ii in plastic additional outputs

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• comments and citations for new yield option tresca

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• outcommented assert for yield case with elasticity, ran make indent

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• assume always yielding in fault for tresca yield mechanism

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• use friction coefficient in tresca yield case

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  8c8f64b

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• added prints to find composition error

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• index variables for fault and theta computed within parse_parameters

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  9c50dbb

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• resolved fault and theta index problems

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  5163a9a

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• RDT within fault stength for tresca

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  02db156

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• addressed all of Annes comments about friction_options.h, renamed

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• addressed some comits from Anne

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• adressed all easy comments from Anne

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• introduced parameter use_always_yielding

  EstherHeck

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• rearranged compute_dependent_friction to avoid code duplication

  EstherHeck

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• documentation and removable of outdated check for dynamic rfiction angles

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  14b2a2b

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• assert for correct tan/atan conversion

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  158a94c

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• FrictionAdditionalOutputs working and documentation things

  EstherHeck

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  690dddf

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• last changes after Annes review, assertthrow for friction nan or inf

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• return something after switch to get rid of compile warning

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  534e174

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• added steady-state friction as a friction option, but not sure if I take the right velocity

  EstherHeck

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• added parameter whether to cut edot_ii after RDT or not

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• for a<=0 still take into account contrib from b

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  7432dfa

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• use constant not actual velocity in stst friction

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  90e55b6

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• remove wrong )

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  20173b1

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• limit theta_old to >=0)

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• limit old theta to >= 1e-50

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• steady-state RSF now also within use_theta, though not sure if it should be

  EstherHeck

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• added effective friction factor in steady state RSF and made indent

  EstherHeck

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• reintroduction of theta_increment to limit it so the new theta in reaction terms remains positive

  EstherHeck

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• made single parameter point out of point_a and point_b

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• documentation and improvement for steady-state RSF, theta now changes appropriately,

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• prototype particle property theta builds

  EstherHeck

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• make friction assert more informative

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  8f199a9

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• not cut old theta, particle property theta working

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  EstherHeck

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• reduced effective friction factor to one function and made it pf/sig_n without the 1-

  EstherHeck

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  341a8f3

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• added effective friction factor in regularized RSF for a=0, made indent

  EstherHeck

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• compute RDT when using tresca yield option

  EstherHeck

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• adjusted error message for effective friction factor >=0 and <1

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• add prints, no cut old theta, do cut current theta and increment

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• print neg theta on particle

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  1a04d66

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• do cut old theta and increment, not cut current theta

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  3c4720a

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• not cut theta increment

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• do cut old, current, and increment theta

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• outcomment asserts that inhibit iterated advection

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• also print if theta is positive

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• esle to else

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• print the position where theta is negative

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• made theta = old_theta for very low strain rates, also print zero theta, made indent

  EstherHeck

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• only compute theta when inside fault material, and only update theta on particle if not in dt 0

  EstherHeck

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• make prints more informative: Zero and dt

  EstherHeck

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  c2d7f3f

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• only compute theta when in fault material of >50% volume, same for going into compute_dependent_friction_angle, only compute theta once, in reaction terms, some other things that came along

  EstherHeck

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  bc3c8c3

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• make an input parameter whether to print negative/Zero theta

  EstherHeck

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• friction options are taken into account from visco_plastic

  EstherHeck

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  f43ba77

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• added Lapusta time step files

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  88bac1b

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• WIP to get all params needed

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  5c1d119

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• a function to compute delta_theta_max

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• Lapusta time step builds

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• segmentation fault error when trying to get the component mask in the lapusta time step

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  5c9eea9

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• all four Lapusta timestep criteria added. Still some todos and runtime error

  EstherHeck

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  ec3a7b1

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• compiling but not running, moved delta_theta_max function to visco_plastic

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• assert for inf or nan delta_theta_max

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• something in the check prints

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• still not working. Cannot call rheology function from material model.

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• Lapusta time step does not through error anymore

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  ba4cc13

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• if min healing dt <= 0 make it very large

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  1ca89d4

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• dont let volume_fractions become negative

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  640fd12

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• uncomment min healing time step to see if Lapusta only does not work bc of theta

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  7a9437d

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• made it work again after rebase

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  abf9758

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• all lapusta timesteps taken into account, some cleaning up

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  5ac9619

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• assertthrow for negative theta in min healing timestep function

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• Lapusta timestep length written to screen

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• if min helaing dt negative, dont use it

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• return largest number for healing dt if it is <= 1e-50

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  738b2a0

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• make it work after rebase

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  268631a

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• make it compile after rebase with master, make indent

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  49b981e

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• added an RSF convection time step. Made indent

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  1a06072

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• adressed Annes quick Lapusta time step review. Deleted two folders in doc/manual/cookbook/benchmarks to see if that gets rid of that rebase error message with the hints of editing the todo

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• adressed Annes quick Lapusta time step review

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• time in point values set to higher precision when RSF is used. Made indent

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• only take higher CFL number if velocity is significantly (100) lower

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  388c687

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• only take higher CFL number if velocity is higher (5 times)

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• take the right logic for when to increase CFL number

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  33b488f

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• lapusta tiestep only computed within fault. Made indent

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• introduced only temporarily important parameter to use min time step length for the first timestep

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  5e0945e

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• only compute theta on particle if initial fault value > 0.5

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  1c99e5d

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• fixed double bool mistake

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  91164cd

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• fix exception for theta on particle - fault not initial fault

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  344db19

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• try the other way to ask for fault index on particle

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  f21d601

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• Part 1: update comments and todos, go through logic

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• Part 2: update comments and todos, go through logic

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  4b2e5a8

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• Part 3 (last part): update comments and todos, go through logic

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  b5e8f8f

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• refined theta prints

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  07a3cc9

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• also print particle ID for checking the theta values

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  279c793

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• more and reworked prints for theta, made indent

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  7da961c

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• lots of changes in the theta printing and ONE IMPORTANT change in the particle theta updating, theta reaction terms NOT using theta equation for testing purpose

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  41534b9

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• compute_theta_reaction terms now updates theta correctly again

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• asserts for current/old theta <= 0 wherever used

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• renamed "quasi static strain rate" parameter to "RSF reference slip rate"

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• todo for default for critical slip distance function

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  417faa8

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• corrected error message for old theta

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  2ab7f0c

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• provisoricly moved effective friction factor from friction to pressure

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• added effective friction factor to lapusta timesteps delta_theta_max, removed (1- from effective friction factor at yielding,ran made indent

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  1b9560d

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• overwrite stresses on particles with particle value

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  2cfa13f

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• dont print stress values to screen

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• ran make indent

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• added "1-" to the get_effective_friction_factor function to ensure that default of 0 makes sense

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• also put the "1-" into the assertthrow...

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• make 1 to 0 - undo a mistake and crudely make lapusta hopefully work

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  cc7f63b

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• print infos for min vep relaxation time step

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• removal of the prints in the lapusta time step and add comments

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  27b731c

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• moved RDT into drucker prager yield stress

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  642bd96

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• fixed assert

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  ab6bcb9

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• removed outdated parameter cut_edot_ii after RDT

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• print yield stress current stress viscosity to check if it converges

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• outcomment printing for vep relaxation time step

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• add prints for different yield stresses

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  2032849

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• removed unecessary parameter print_thetas, made indent

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• removed unused function

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• modified stress prints, removed unused variable

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  2a31745

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• refine print

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• do something with prints

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  795e06a

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• hopefully fix the issue that critical slip distance function must be specified by moving assert into if(use_theta)\n to avoid complications, also only use L from fault material to compute theta

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  90e68d1

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• Fixed: RSF parameter function now only need to be specified if RSF is used

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• remove deprecated parameter effective_friction_factor and clean up documentation for effective_friction_factor_function

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• removed deprecated todos

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  eec0df5

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• restructuring of lapusta timestep

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  7734ade

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• fixed critical slip distance assert

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  93397b1

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• go through parameter texts

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  cfe4c66

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• made indent

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  009d54e

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• somment on units for theta

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  ac078c8

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• deleted all cutting of theta except for within compute_theta and on particle. Cleaned up comments in particle property theta

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  9cb6bfd

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• make an input list for what compositions should use RSF

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  07c047d

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• Add TODOs

  

  anne-glerum

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• Update TODOs based on discussion and reviews

  

  anne-glerum

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• Update TODOs

  

  anne-glerum

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  e5d2e8b

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• Add reaction_rates

  

  anne-glerum

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• Update according to App E

  

  anne-glerum

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• Add ReactionRates

  

  anne-glerum

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  d77b6b8

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• Update fill_reaction_terms

  

  anne-glerum

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• Update parse_parameters

  

  anne-glerum

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  cb0e577

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• Update calculate_isostrain_viscosities

  

  anne-glerum

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  bc6a0d2

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• Assert no plastic damper

  

  anne-glerum

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• Update comments

  

  anne-glerum

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  6babfcd

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• Fix 2 bugs

  

  anne-glerum

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• Add pp to output the min and max of the stress components

  

  anne-glerum

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• fix a debug-runtime error about the RSF-mask

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• work on friction/theta asserts

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• Fix precision statistiscs

  

  anne-glerum

  authored and

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• rename variables after rebase etc

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• get old theta correctly - using elastic stresses as an example

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• WIP get old theta correctly, building with errors

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  b6fc3d9

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• get old theta correctly - no build error left

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• tested that old_theta correct and fixed runtime errors after merge

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• only compute RSF if in RSF material and small other things

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• work on Annes comments

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• cut theta instead of assert

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• resolve segmentation fault error with checking that not in bg field

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  681d902

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• uncomment stress_averaging and remove stress_averaging time_scale_factor from assert

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• uncomment atan assert

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Commits on Nov 30, 2023

• cleaning up after rebase onto PR4370 on 29th nov 2023 commit 30df10c. e g renaming variables"

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Commits on Dec 1, 2023

• made indent and resolved first build errors

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Commits on Dec 5, 2023

• found two typos

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